2021
2020
2019
2018
2021

  1. “Towards Designing an Explainable-AI based Solution for Livestock Mart Industry”, Parit Mehta, Rudresh Dwivedi, Ciaran Feeney, Pankesh Patel, Muhammad Intizar Ali & John Breslin.
  2. “IMPAQT Miniaturized Underwater Acoustic Telemetry Platform: Transmitter Node System Design”, Hamed Jafarzadeh, Marco Belcastro & Brendan O’Flynn.
  3. “Interpretable Classification of Human Exercise Videos through Pose Estimation and Multivariate Time Series Analysis”, Ashish Singh, Binh Thanh Le, Thach Le Nguyen, Darragh Whelan, Martin O’Reilly, Brian Caulfield & Georgiana Ifrim.
  4. “A Service-based Joint Model Used for Distributed Learning: Application for Smart Agriculture”, Dixon Vimalajeewa, Chamil Kulatunga, Donagh Berry & Sasitharan Balasubramaniam.
  5. “A review of precision technologies in pasture-based dairying systems”, L. Shalloo, T. Byrne, L. Leso, E. Ruelle, K. Starsmore, A. Geoghegan, J. Werner & N. O’Leary.
  6. “A Theoretical and Experimental Study of Electrochemical pH Control at Gold Interdigitated Microband Arrays”, Bernardo Patella, Robert Daly, Ian Seymour, Pierre Lovera, James Rohan, Rosslinda Inguanta, Alan O’Riordan & Benjamin O’Sullivan.
  7. “Short communication: Differences in genetic merit for visually-assessed body condition score materialises as phenotypic differences in tactile-based body condition score in commercial dairy cows”, D.P.Berry & M.M.Kelleher.
  8. “Identification of genomic regions that exhibit sexual dimorphism for size and muscularity in cattle”, Jennifer L Doyle, Deirdre C Purfield, Tom Moore, Tara R Carthy, Siobhan W Walsh, Roel F Veerkamp, Ross D Evans & Donagh P Berry.
  9. “If Only We Had Better Counterfactual Explanations: Five Key Deficits to Rectify in the Evaluation of Counterfactual XAI Techniques”, Mark T. Keane, Eoin M. Kenny, Eoin Delaney & Barry Smyth.
  10. “Theoretical Models for Underwater RFID and the Impact of Water Salinity on the Design of Wireless Systems”, Peres, Caroline; Pigeon, Melusine; Rather, Nadeem; Gawade, Dinesh; Buckley, John; Jafarzadeh, Hamed; O’Flynn, Brendan.
  11. “Towards Designing Computer Vision-based Explainable-AI Solution: A Use Case of Livestock Mart Industry”, Devam Dave, Het Naik, Smiti Singhal, Rudresh Dwivedi and Pankesh Patel.
  12. Porcine reproductive and respiratory syndrome virus impacts on gut microbiome in a strain virulence-dependent fashion”, Héctor Argüello, Irene Magdalena Rodríguez-Gómez, Jose María Sánchez-Carvajal, Francisco José Pallares, Iván Díaz, Raúl Cabrera-Rubio, Fiona Crispie, Paul D. Cotter, Enric Mateu, Gerard Martín-Valls, Librado Carrasco, Jaime Gómez-Laguna.
  13. “Characterising soil moisture regimes on poorly drained soils in Ireland using optical satellite derived vegetation indices and the OPTRAM model”, Rumia Basu, Colin Brown, Patrick Tuohy & Eve Daly.
  14. “Prediction of genetic merit for live weight and body condition score in dairy cows using routinely available linear type and carcass data”, D.P.Berry, R.D.Evans & M.M.Kelleher.
  15. Advances of plant-based structured food delivery systems on the in vitro digestibility of bioactive compounds”,
    Talita A. Comunian,Stephan Drusch & André Brodkorb.
  16. “On-body Edge Computing through E-Textile Programmable Logic Array”, Frances Cleary, David Henshall & Sasitharan Balasubramaniam.
  17. “Post-Hoc Explanation Options for XAI in Deep Learning: The Insight Centre for Data Analytics Perspective”, Eoin M. Kenny, Eoin D. Delaney, Derek Greene & Mark T. Keane.
  18. “Co-clustering of time-dependent data via Shape Invariant Model”, Alessandro Casa, Charles Bouveyron, Elena Erosheva & Giovanna Menardi.
  19. “Handling Climate Change Using Counterfactuals: Using Counterfactuals in Data Augmentation to Predict Crop Growth in an Uncertain Climate Future”, Mohammed Temraz, Eoin M. Kenny, Elodie Ruelle, Laurence Shalloo, Barry Smyth & Mark T. Keane.
  20. “Platinum Interdigitated Electrode Arrays for Reagent-free Detection of Copper”, Robert Daly, Tarun Narayan, Alan O’Riordan & Pierre Lovera.
  21. “Microfluidic-based Bacterial Molecular Computing on a Chip”, Daniel P. Martins, Michael Taynnan Barros, Benjamin O’Sullivan, Ian Seymour, Alan O’Riordan, Lee Coffey,
    Joseph Sweeney, & Sasitharan Balasubramaniam.
  22. “Assessment of the biological activity of fish muscle protein hydrolysates using in vitro model systems”, Shauna Heffernan, Linda Giblin & Nora O’Brien.
  23. “Digestive System Dynamics in Molecular Communication Perspectives”, Dixon Vimalajeewa & Sasitharan Balasubramaniam.
  24. “Cross-sectional analyses of a national database to determine if superior genetic merit translates to superior dairy cow performance”, S.C.Ring, R.D.Evans, A.R.Cromie & D.P.Berry.
  25. “NFC Sensing of Tear Fluid for Animal health Monitoring”, Melusine Pigeon; Nadeem Rather; Brendan O’Flynn & John Buckley.
  26. “Twin Systems for DeepCBR: A Menagerie of Deep Learning and Case-Based Reasoning Pairings for Explanation and Data Augmentation”, Mark T. Keane, Eoin M. Kenny, Eoin Delaney, Mohammed Temraz, Derek Greene & Barry Smyth.
  27. “Greenhouse gas emissions and nitrogen efficiency of dairy cows of divergent economic breeding index under seasonal pasture-based management”, B.Lahart, L.Shalloo, J.Herron, D.O’Brien, R.Fitzgerald, T.M.Boland & F.Buckley.
  28. “Protein quality and quantity influence the effect of dietary fat on weight gain and tissue partitioning via host-microbiota changes”, Oleksandr Nychyk, WileyBarton, Agata M.Rudolf, Serena Boscaini, Aaron Walsh, Thomaz F.S.Bastiaanssen, Linda Giblin, Paul Cormican, Liang Chen, Yolanda Piotrowicz, Davina Derous, Áine Fanning, Xiaofei Yin, Jim Grant, Silvia Melgar, Lorraine Brennan, Sharon E.Mitchell, John F.Cryan & Kanishka N.Nilaweera.
  29. “A Bandwidth Enhanced Sub-GHz Wristwatch Antenna using an Optimized Feed Structure”, Sanjeev Kumar; Robert Newberry; Tim Hannon; John Barton; Matthew Rodencal; Melusine Pigeon; William G. Scanlon & Brendan O’Flynn.
  30. “Rescaling genetic expression of carcass traits in cattle by environment using herd best linear unbiased estimates (BLUEs)”, David Kenny, Roy D.Sleator,Craig P.Murphy, Ross D.Evans & Donagh P.Berry.
  31. “Herd solutions from genetic evaluations can be used as a tool to rescale the expected expression of genetic potential in cattle”, David Kenny, Roy D. Sleator, Craig P. Murphy, Ross D. Evans,
    & Donagh P. Berry.
  32. “Carotenoids in Milk and the Potential for Dairy Based Functional Foods”, Ruth Conboy Stephenson, R. Paul Ross & Catherine Stanton.
  33. “Mid-infrared spectroscopy and milk quality traits: a data analysis competition at the International Workshop on Spectroscopy and Chemometrics 2021”, Maria Frizzarin, Antonio Bevilacqua, Bhaskar Dhariyal, Katarina Domijan, Federico Ferraccioli, Elena Hayes, Georgiana Ifrim, Agnieszka Konkolewska, Thach Le Nguyen, Uche Mbaka, Giovanna Ranzato, Ashish Singh, Marco Stefanucci, & Alessandro Casa.
  34. “Incorporation of the grazing utilization subindex and new updates to the Pasture Profit Index”, T.Tubritt, L.Shalloo, T.J.Gilliland, N.McHugh & M.O’Donovan.
  35. “A Graph-based Molecular Communications Model Analysis of the Human Gut Bacteriome”, Samitha Somathilaka, Daniel P. Martins, Wiley Barton, Orla O’Sullivan, Paul D. Cotter & Sasitharan Balasubramaniam.
  36. “Uncertainty Estimation and Out-of-Distribution Detection for Counterfactual Explanations: Pitfalls and Solutions”, Eoin Delaney, Derek Greene & Mark Keane.
  37. “Channel Capacity of Starch and Glucose Molecular Communications in the Small Intestine Digestive Tract”, Dixon Vimalajeewa & Sasitharan Balasubramaniam.

2020

  1. “Observed progeny performance validates the benefit of mating genetically elite beef sires to dairy females”, D.P.Berry & S.C.Ring.
  2. “Dairy-derived peptides for satiety”, Alina Kondrashina, André Brodkorb, Linda Giblin. 
  3. “Genomic regions associated with muscularity in beef cattle differ in five contrasting cattle breeds”, Jennifer L. Doyle, Donagh P. Berry, Roel F. Veerkamp, Tara R. Carthy, Ross D. Evans, Siobhán W. Walsh & Deirdre C. Purfield.
  4. “Electrochemical-Based Serological Detection of Bovine Immunoglobulin G in Calves”, Caoimhe Robinson, Niamh Creedon, Riona Sayers, Emer Kennedy, Alan O Riordan.
  5. “Grazing Cow Behavior and Lameness”, Niall W. O’Leary, Daire. T. Byrne, Pauline Garcia, Jessica Werner, Morgan Cabedoche, and Laurence Shalloo.
  6. “Electrochemical Detection of Free-Chlorine in Water Samples Facili-tated by in-situpH Controlusing Interdigitated Microelectrodes”, Ian Seymour, Benjamin O’Sullivan, Pierre Lovera, James F. Rohan, and Alan O’Riordan.
  7. “The use of subjectively assessed muscular and skeletal traits on live cattle to aid in differentiation between animal genetically divergent in carcass kill out metrics”, D.P.Berry J.M.Coyne J.Doyle R.D.Evans.
  8. “Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle”, Pierce Rafter, Isobel Claire Gormley, Andrew C. Parnell, John Francis Kearney & Donagh P. Berry.
  9. “A Wristwatch-BasedWireless Sensor Platform for IoT Health Monitoring Applications”, Sanjeev Kumar, John L. Buckley, John Barton, Melusine Pigeon, Robert Newberry, Matthew Rodencal, Adhurim Hajzeraj, Tim Hannon, Ken Rogers, Declan Casey, Donal O’Sullivan and Brendan O’Flynn.
  10. “Highly Sensitive SERS Detection of Neonicotinoid Pesticides. Complete Raman Spectral Assignment of Clothianidin and Imidacloprid”, Niamh Creedon, Pierre Lovera, Jose Julio Gutierrez Moreno, Michael Nolan, Alan O’Riordan.
  11. “Grazing Cow Behavior’s Association with Mild and Moderate Lameness”, Niall W. O’Leary, Daire. T. Byrne, Pauline Garcia, Jessica Werner, Morgan Cabedoche and Laurence Shalloo.
  12. “Energy-Aware Tracking of Mobile Targets by Bacterial Nanonetworks”, Nabiul Islam; Saswati Pal; Sasitharan Balasubramaniam; Sudip Misra.
  13. “Breed- and trait-specific associations define the genetic architecture of calving performance traits in cattle”, Deirdre C Purfield, Ross D Evans, Donagh P Berry.
  14. “The probiotic L. casei LC-XCAL™ improves metabolic health in a diet-induced obesity mouse model without altering the microbiome”, Calum J. Walsh , Selena Healy , Paul W. O’Toole , Eileen F. Murphy & Paul D.Cotter.
  15. “Good Counterfactuals and Where to Find Them: A Case-Based Technique for Generating Counterfactuals for Explainable AI (XAI)”, Mark T. Keane & Barry Smyth.
  16. “Animal-level factors associated with the achievement of desirable specifications in Irish beef carcasses graded using the EUROP classification system”, David Kenny, Craig P Murphy, Roy D Sleator, Michelle M Judge, Ross D Evans, Donagh P Berry.
  17. “Cow and herd-level risk factors associated with mobility scores in pasture-based dairy cows”, A.H.O’Connor, E.A.M.Bokkers, I.J.M.de Boer, H.Hogeveen, R.Sayers, N.Byrne, E.Ruelle, B.Engel, L.Shalloo
  18. “Validation of an Automated Body Condition Scoring System Using 3D Imaging”, Niall O’ Leary, Lorenzo Leso, Frank Buckley, Jonathon Kenneally, Diarmuid McSweeney and Laurence Shalloo.
  19. “Feed and production efficiency of young crossbred beef cattle stratified on a terminal total merit index”, David N. Kelly, Stephen B. Conroy, Craig P. Murphy, Roy D. Sleator, and Donagh P. Berry.
  20. “Large variability in feeding behavior among crossbred growing cattle”, David. N. Kelly, Roy. D. Sleator, Craig. P. Murphy, Stephen. B. Conroy, Michelle. M Judge, and Donagh. P. Berry.
  21. “Short communication: Animal-level factors associated with whether a dairy female is mated to a dairy or beef bull”, D.P.Berry & S.C.Ring.
  22. “Short communication: The beef merit of the sire mated to a dairy female affects her subsequent performance”, D.P.Berry & S.C.Ring.
  23. “Kefir microbial composition is a deciding factor in the physiological impact of kefir in a mouse model of obesity”, Benjamin C. T. Bourrie, Tingting Ju, Janelle M. Fouhse, Andrew J. Forgie, Consolato Sergi, Paul D. Cotter and Benjamin P. Willing.
  24. “The E ect of Compositional Changes Due to Seasonal Variation on Milk Density and the Determination of Season-Based Density Conversion Factors for Use in the Dairy Industry”, Puneet Parmar, Nicolas Lopez-Villalobos, John T. Tobin, Eoin Murphy, Arleen McDonagh, Shane V. Crowley, Alan L. Kelly and Laurence Shalloo.
  25. “Distributed Denial of Service Cyberbioattack Affecting Bacteria-based Biosensing Systems”, Sergio Lopez Bernal, Daniel Perez Martins, Alberto Huertas Celdran.
  26. “Simultaneous Detection of Copper, Lead and Mercury in River Water with In-Situ pH Control Using Electrochemical Stripping Techniques”, Bernardo Patella, Benjamin O’Sullivan, Robert Daly, Pierre Lovera, Rosslinda Inguanta, Alan O’Riordan.
  27. “Elimination of Oxygen Interference in the Electrochemical Detection of Monochloramine, Using In-Situ pH Control at Interdigitated Electrodes”, Ian Seymour, Benjamin O’Sullivan, Pierre Lovera, Alan O’Riordan, James Rohan.
  28. “Identifying artificially drained pasture soils using machine learning and Earth observation imagery”, Rob O’Hara, Stuart Green, Tim McCarthy, Conor Cahalane, Owen Fenton, Pat Tuohy.
  29. “Delivery of β-carotene to the in vitro intestinal barrier using nanoemulsions with lecithin or sodium caseinate as emulsifiers”, Ariadna Gasa-Falcon, Elena Arranz, Isabel Odriozola-Serrano, Olga Martín-Belloso & Linda Giblin.
  30. “Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality”, Aaron M. Walsh, Guerrino Macori, Kieran N. Kilcawley & Paul D. Cotter.
  31. “A Model-Agnostic Approach to Quantifying the Informativeness of Explanation Methods for Time Series Classification”, Thu Trang Nguyen, Thach Le Nguyen, and Georgiana Ifrim.
  32. “Genetic control of temperament traits across species: association of autism spectrum disorder risk genes with cattle temperament”, Roy Costilla, Kathryn E. Kemper, Enda M. Byrne, Laercio R. Porto-Neto, Roberto Carvalheiro, Deirdre C. Purfield, Jennifer L. Doyle, Donagh P. Berry, Stephen S. Moore, Naomi R. Wray & Ben J. Hayes. 
  33. “Evolving Intelligent Reflector Surface towards 6G for Public Health: Application in Airborne Virus Detection”, Harun Siljak, Nouman Ashraf, Michael Taynnan Barros, Daniel Perez Martins, Bernard Butler, Arman Farhang, Nicola Marchetti, Sasitharan Balasubramaniam.
  34. “On Generating Plausible Counterfactual and Semi-Factual Explanations for Deep Learning”, Eoin M. Kenny and Mark T. Keane.
  35. “Play MNIST For Me! User Studies on the Effects of Post-Hoc, Example-Based Explanations & Error Rates on Debugging a Deep Learning, Black-Box Classifier”, Courtney Ford, Eoin M. Kenny & Mark T. Keane.
  36. “Hydrogel-based Bio-nanomachine Transmitters for Bacterial Molecular Communications”, Daniel P. Martins, Huong Q.-O’Reilly, Lee Coffey, Paul D. Cotter & Sasitharan Balasubramaniam.
  37. “Instance-Based Counterfactual Explanations for Time Series Classification”, Eoin Delaney, Derek Greene and Mark T. Keane.
  38. “Good Counterfactuals and Where to Find Them: A Case-Based Technique for Generating Counterfactuals for Explainable AI (XAI)”, Mark T. Keane and Barry Smyth.
  39. “Development and evaluation of a processing sector model for butter manufacture using a mass balance technique at two dairy processing sites”, Puneet Parmar, Nicolas Lopez‐Villalobos, John T Tobin, Eoin Murphy, Shane V Crowley, Alan L Kelly, Laurence Shalloo.
  40. “Carcass and efficiency metrics of beef cattle differ by whether the calf was born in a dairy or a beef herd”, A J Twomey, S C Ring, N McHugh, D P Berry.
  41. “Stereochemistry of Astaxanthin Biosynthesis in the Marine Harpacticoid Copepod Tigriopus Californicus”, Alfonso Prado-Cabrero, Ganjar Saefurahman and John M. Nolan.
  42. “Block Chain and Internet of Nano-Things for Optimizing Chemical Sensing in Smart Farming”, Dixon Vimalajeewa, Subhasis Thakur, John Breslin, Donagh P. Berry, Sasitharan Balasubramaniam.
  43. “An Examination of the State-of-the-Art for Multivariate Time Series Classification”, Bhaskar Dhariyal, Thach Le Nguyen, Severin Gsponer and Georgiana Ifrim.
  44. “An index framework founded on the future profit potential of female beef cattle to aid the identification of candidates for culling”, F. L. Dunne, D. P. Berry M. M. Kelleher, R. D. Evans, S. W. Walsh and P. R. Amer.
  45. “Suboptimal mobility in spring calving, pasture-based dairy systems: causes and economic consequences.”, Aisling H. O’Connor.
  46. “Extracting Pasture Phenotype and Biomass Percentages using Weakly Supervised Multi-target Deep Learning on a Small Dataset”, Badri Narayanan, Mohamed Saadeldin, Paul Albert, Kevin McGuinness, and Brian Mac Namee.
  47. “Effect of temperature on raw whole milk density and its potential impact on milk payment in the dairy industry”, Puneet Parmar Nicolas Lopez‐Villalobos John T. Tobin Eoin Murphy Frank Buckley Shane V. Crowley Alan L. Kelly Laurence Shalloo.
  48. “The effects of sustained fitness improvement on the gut microbiome: A longitudinal, repeated measures case-study approach.”, Wiley Barton, Owen Cronin, Isabel Garcia-Perez, Ronan Whiston, Elaine Holmes, Trevor Woods, Catherine B. Molloy, Michael G. Molloy Fergus Shanahan, Paul D. Cotter, Orla O’Sullivan.
  49. “A Model of Decentralized Social Internet of Things using Blockchain Offline Channels”, Subhasis Thakur; John G. Breslin.
  50. “The effects of cow genetic group on the density of raw whole milk”, P. Parmar, N. Lopez-Villalobos, J.T. Tobin, E. Murphy, F. Buckley, A. McDonagh, J.A. O’Mahony, S.V. Crowley, A.L. Kelly, L. Shalloo.
  51. “An Edge Colouring-based Collaborative Routing Protocol for Blockchain Offline Channels”, Subhasis Thakur; John G. Breslin.

2019

  1. “Analysis of Health Benefits Conferred by Lactobacillus Species from Kefir”, Conor Slattery,Paul D. Cotter and Paul W. O’Toole
  2. “Prediction of 24-hour milk yield and composition in dairy cows from a single part-day yield and sample”, McParland, S., Coughlan, B., Enright, B., O’Keeffe, M., O’Connor, R., Feeney, L., Berry, D.P.
  3. “Improvement of Feed Efficiency in Pigs through Microbial Modulation via Fecal Microbiota Transplantation in Sows and Dietary Supplementation of Inulin in Offspring”, Ursula M. McCormack, Tânia Curião, Barbara U. Metzler-Zebeli, Toby Wilkinson, Henry Reyer, Fiona Crispie, Paul D. Cotter, Christopher J. Creevey, Gillian E. Gardiner, Peadar G. Lawlor
  4. “A large interactive visual database of copy number variants discovered in taurine cattle”, Kommadath, A., Grant, J.R., Krivushin, K., Butty, A.M., Baes, C.F., Carthy, T.R., Berry, D.P. and Stothard, P.
  5. Feed efficiency and carcass metrics in growing cattle, David N Kelly, Craig Murphy, Roy D Sleator, Michelle M Judge, Stephen B Conroy, Donagh P Berry
  6. “Linear classification scores in beef cattle as predictors of genetic merit for individual carcass primal cut yields”, Donagh P Berry, Thierry Pabiou, Rory Fanning, Ross D Evans, Michelle M Judge
  7. “Potential exists to change, through breeding, the yield of individual primal carcass cuts in cattle without increasing overall carcass weight”, Michelle M Judge, Thierry Pabiou, Jessica Murphy, Stephen B Conroy, P J Hegarty, Donagh P Berry
  8. “Predicted carcass meat yield and primal cut yields in cattle divergent in genetic merit for a terminal index”, Stephen M Connolly, Andrew R Cromie, Roy D Sleator, Donagh P Berry
  9. “Associations between colostrum management, passive immunity, calf-related hygiene practices, and rates of mortality in preweaning dairy calves”, J.Barry, E.A.M.Bokkers, D.P.Berry, I.J.M.de Boer, J.McClure, E.Kennedy
  10. “Choice of artificial insemination beef bulls used to mate with female dairy cattle”, D.P.Berry, S.C.Ring, A.J.Twomey, R.D.Evans
  11. “Reaffirmation of known major genes and the identification of novel candidate genes associated with carcass-related metrics based on whole genome sequence within a large multi-breed cattle population”, D. C. Purfield, R. D. Evans and D. P. Berry
  12. “Leveraging Social Network Analysis for Characterizing Cohesion of Human-Managed Animals”, Dixon Vimalajeewa  ; Sasitharan Balasubramaniam ; Bernadette O’Brien ; Chamil Kulatunga ; Donagh P. Berry
  13. “Cholestasis induced by bile duct ligation promotes changes in the intestinal microbiome in mice”, Raul Cabrera-Rubio, Angela M. Patterson, Paul D. Cotter & Naiara Beraza
  14. Identification and characterisation of capidermicin, a novel bacteriocin produced by Staphylococcus capitis, David Lynch, Paula M. O’Connor, Paul D. Cotter, Colin Hill, Des Field,Maire Begley
  15. “Genetics of bull semen characteristics in a multi-breed cattle population.”, Berry DP, Eivers B, Dunne G, McParland S
  16. “How herd best linear unbiased estimates impact the progress achievable from gains in additive and non-additive genetic merit”, F.L.Dunne, S.McParland, M.M.Kelleher, S.W.Walsh, D.P.Berry
  17. “Genome-wide association study of endo-parasite phenotypes using imputed whole-genome sequence data in dairy and beef cattle”, Twomey, A.J., Berry, D.P., Evans, R.D., Diherty, M.L., Grham, D.,A., and Purfield D. C.
  18. “Nanoimprint Lithography–Based Fabrication of Plasmonic Array of Elliptical Nanoholes for Dual-Wavelength, Dual-Polarisation Refractive Index Sensing”, Robinson, Caoimheand Justice, Johnand Pet, Jarnoand Karppinen, Mikkoand Corbett, Brianand O’Riordan, Alanand Lovera, Pierre
  19. “Moving Forward with Molecular Communication: from Theory to Human Health Applications”, Ian F Akyildiz, Massimiliano Pierobon, Sasitharan Balasubramaniam
  20. “Co-simulation of electricity distribution networks and peer to peer energy trading platforms”, B.P. Hayes, S. Thakur, J.G. Breslin
  21. “Weather forecasts to enhance an Irish grass growth model”, J.McDonnell, C.Brophy, E.Ruelle, L.Shalloo, K.Lambkin D.Hennessy
  22. “Effect of parity weighting on milk production forcast models”, Zhang F., Upton J., Shalloo L. and Murphy M.D.
  23. “Bioengineering nisin to overcome the nisin resistance protein”, Des Field, Tony Blake, Harsh Mathur, Paula M. O’ Connor, Paul D. Cotter, R. Paul Ross, Colin Hill
  24. “Cattle stratified on genetic merit segregate on carcass characteristics, but there is scope for improvement”, Donagh P Berry, Thierry Pabiou, Denis Brennan, Patrick J Hegarthy, Michelle M Judge
  25. “Dietary α-lactalbumin alters energy balance, gut microbiota composition and intestinal nutrient transporter expression in high-fat diet-fed mice”, Serena Boscaini, Raul Cabrera-Rubio, John R. Speakman, Paul D. Cotter, John F. Cryan and Kanishka N. Nilaweera
  26. “Dressing percentage and the differential between live weight and carcass weight in cattle are influenced by both genetic and non-genetic factors”, Jessica M Coyne, Ross D Evans, Donagh P Berry
  27. “Factors associated with the weight of individual primal cuts and their inter-relationship in cattle”, Michelle M Judge, Thierry Pabiou, Stephen Conroy, Rory Fanning, Martin Kinsella, Diarmaid Aspel, Andrew R Cromie, Donagh P Berry
  28. “Genetic parameters for animal mortality in pasture-based, seasonal-calving dairy and beef herds”, S.C. Ring, R.D.Evans, M.L.Doherty, D.P.Berry
  29. “Influence of the Intestinal Microbiota on Colonization Resistance to Salmonella and the Shedding Pattern of Naturally Exposed Pigs”, Héctor Argüello, Jordi Estellé, Finola C. Leonard, Fiona Crispie, Paul D. Cotter, Orla O’Sullivan, Helen Lynch, Kavita Walia, Geraldine Duffy, Peadar G. Lawlor, Gillian E. Gardiner
  30. “Lactobacillus gasseri APC 678 Reduces Shedding of the Pathogen Clostridium difficile in a Murine Model”, Lisa Quigley, Mairéad Coakley, Debebe Alemayehu, Mary C. Rea, Patrick G. Casey, Órla O’Sullivan, Eileen Murphy, Barry Kiely, Paul D. Cotter, Colin Hill and R. Paul Ross
  31. “The dynamics of the antibiotic resistome in the feces of freshly weaned pigs following therapeutic administration of oxytetracycline”, Mahdi Ghanbari, Viviana Klose, Fiona Crispie & Paul D. Cotter
  32. “The effect of ovine milk fermentation on the antithrombotic properties of polar lipids”, Ronan Lordan, Aaron M.Walsh, Fiona Crispie, LauraFinnegan, Paul D.Cotter, Ioannis Zabetakis
  33. “Quality and Capacity Analysis of Molecular Communications in Bacterial Synthetic Logic Circuits”, Daniel Martins, Michael T Barros, Sasitharan Balasubramaniam
  34. “An Information Theoretic Framework to Analyze Molecular Communication Systems Based on Statistical Mechanics”, Ian F. Akyildiz, Massimiliano Pierobon, Sasitharan Balasubramaniam
  35. “Genetic (co)variances between milk mineral concentration and chemical composition in lactating Holstein-Friesian dairy cows”, G. Visentin, G. Niero, D. P. Berry, A. Costa, M. Cassandro, M. De Marchi and M. Penasa
  36. “Scenarios to limit environmental nitrogen losses from dairy expansion.”, Hoekstra NJ, Schulte RPO, Forrestal PJ, Hennessy D, Krol DJ, Lanigan GJ, Müller C, Shalloo L, Wall DP, Richards KG
  37. “Setting targets for the Irish Dairy Industry”, L. Shalloo and L. Hanrahan
  38. “Brevibacillus laterosporus strains BGSP7, BGSP9 and BGSP11 isolated from silage produce broad spectrum multi-antimicrobials”, Marija Miljkovic, Sofija Jovanovic, Paula M. O’Connor, Nemanja Mirkovic, Branko Jovcic, Brankica Filipic, Miroslav Dinic, David John Studholme, Djordje Fira, Paul D. Cotter, Milan Kojic
  39. “Diversity and composition of the gut microbiota of Atlantic salmon (Salmo salar) farmed in Irish waters”, Colin Fogarty, Catherine M. Burgess, Paul D. Cotter, Raul Cabrera‐Rubio, Paul Whyte, Conor Smyth, Declan J. Bolton
  40. “Potential for enriching next-generation health-promoting gut bacteria through prebiotics and other dietary components”, Cathy Lordan, Dinesh Thapa, R. Paul Ross & Paul D. Cotter
  41. “An examination of the effects of labor efficiency on the profitability of grass-based, seasonal-calving dairy farms.”, Deming J, Kinsella J, O’Brien B, Shalloo L
  42. “Effect of introducing weather parameters on the accuracy of milk production forecast models.”, F. Zhang, J. Upton, L. Shalloo, P. Shine, M. D. Murphy.
  43. “Structure, stability and water adsorption on ultra-thin TiO2 supported on TiN”, José Julio Gutiérrez Moreno, Marco Fronzi, Pierre Lovera , Alan O’Riordan , Michael J. Ford , Wenjin Li and Michael Nolan
  44. VAssociating cow characteristics with mobility scores in pasture-based dairy cows.”, O’Connor AH, Bokkers EAM, de Boer IJM, Hogeveen H, Sayers R, Byrne N, Ruelle E, Shalloo L
  45. “Evaluation and application potential of an accelerometer-based collar device for measuring grazing behavior of dairy cows.V, Werner J, Umstatter C, Leso L, Kennedy E, Geoghegan A, Shalloo L, Schick M, O’Brien B
  46. “A breeding index to rank beef bulls for use on dairy females to maximize profit”, D.P.Berry, P.R.Amer, R.D.Evans, T.Byrne, A.R.Cromie, F.Hely
  47. “Porcine Feed Efficiency-Associated Intestinal Microbiota and Physiological Traits: Finding Consistent Cross-Locational Biomarkers for Residual Feed Intake”, Ursula M. McCormack, Tânia Curião, Barbara U. Metzler-Zebeli, Elizabeth Magowan, Donagh P. Berry, Henry Reyer, Maria L. Prieto, Stefan G. Buzoianu, Michael Harrison, Natalie Rebeiz, Fiona Crispie, Paul D. Cotter, Orla O’Sullivan, Gillian E. Gardiner, Peadar G. Lawlor
  48. “Leveraging Fog Analytics for Real-Time Animal Localization in IoT-Enabled Dairy Farms.”, K. Bhargava, S. Ivanov, D. McSweeney,W. Donnelly.
  49. “Genomic Regions Associated With Gestation Length Detected Using Whole-Genome Sequence Data Differ Between Dairy and Beef Cattle.”, Purfield DC, Evans RD, Carthy TR, Berry DP
  50. “Candidate genes associated with the heritable humoral response to Mycobacterium avium subspecies paratuberculosisin dairy cows have factors in common with gastrointestinal diseases in humans”, McGovern, S. P., Purfield, D. C., Ring, S. C., Carthy, T. R., Graham, D. A., & Berry, D. P
  51. “A description and evaluation of the physical and financial characteristics of dairy farms operating on soil types classified as poorly drained and associated with high rainfall”, Liam Hanrahan, Pat Tuohy, Noirin McHugh, James O’Loughlin, Brian Moran, Pat Dillon, James Breen, Michael Wallace, Laurence Shalloo
  52. “Linkage between Predictive Transmitting Ability of a Genetic Index (EBI), Potential Milk Production and a Dynamic Model (PBHDM)”, Ruelle e., Delaby L. and Shalloo L
  53. “Effect of parity weighting on milk production forecast models”, F. Zhang, J. Upton, L. Shalloo, M.D. Murphy
  54. “Leveraging Social Network Analysis “for Evaluating Animal Cohesion.”, Dixon Vimalajeewa, Chamil Kulatunga, Sasitharan Balasubramaniam, Brendatte O’Brien, Donagh P Berry
  55. “Dietary alpha-lactalbumin alters energy balance, gut microbiota composition and intestinal nutrient transporter expression in high-fat diet fed mice”, Serena Boscaini, Raul Cabrera-Rubio, John R. Speakman, Paul D. Cotter, John F. Cryan and Kanishka N. Nilaweera
  56. “Development of a welfare assessment protocol for dairy calves from birththrough to weaning”, J Barry, E Kennedy, R Sayers, IJM de Boer and EAM Bokkers
  57. “A mating advice system in dairy cattle incorporating genomic information”, Carthy TR, McCarthy J, Berry DP
  58. “Effect of teatcup removal settings on milking efficiency and milk quality in a pasture-based automatic milking system”, Silva Boloña, P., D. J. Reinemann, and J. Upton
  59. “Pasture allowance, duration, and stage of lactation—Effects on early and total lactation animal performance”, Emer Kennedy
  60. “Predicting the dry matter intake of grazing dairy cows using infrared reflectance spectroscopy analysis”, Emer Kennedy
  61. “First evidence of production of the lantibiotic nisin P”, Paul Cotter

2018

  1. “Development of the Moorepark St Gilles grass growth model (MoSt GG model): A predictive model for grass growth for pasture based systems”, E. Ruelle D. Hennessy L. Delaby
  2. “A national methodology to quantify the diet of grazing dairy cows”, O Brien D, Moran B. and Shalloo L
  3. “The rumen microbiome: a crucial consideration when optimising milk and meat production and nitrogen utilisation efficiency.”, Matthews C, Crispie F, Lewis E, Reid M, O’Toole PW, Cotter PD.
  4. “Molecular Communications Pulse Jamming Model for Bacterial Biofilm Suppression”, Daniel P. Martins, Leetanasaksakul, K., Michael T. Barros, Arinthip Thamchaipenet, William Donnelly, Sasitharan Balasubramaniam.
  5. “Variance components for Bovine Tuberculosis Infection and Multi-Breed Genome Wide Association Analysis Using Imputed Whole Genome Sequence Data”, Ring, S.C., Purfield, D.C., Good, M., Breslin, P., Ryan, E., Blom, A., Evans, R.D., Doherty, M.L., Bradley, D.G. and Berry, D.P.,
  6. “Genetic variability in the humoral immune response to bovine herpesvirus-1 infection in dairy cattle and genetic correlations with performance traits”, S.C.Ring, D.A.Graham, R.G.Sayers, N.Byrne, M.M.Kelleher, M.L.Doherty, D.P.Berry
  7. “Characterization of best linear unbiased estimates generated from national genetic evaluations of reproductive performance, survival, and milk yield in dairy cows”, F.L.Dunne, M.M.Kelleher, S.W.Walh, D.P.Berry
  8. “Learning in the compressed data domain: Application to milk quality prediction”, Dixon Vimalajeewa, Chamil Kulatunga, Donagh P.Berry
  9. “Genetic parameters for variability in the birth of persistently infected cattle following likely in-utero exposure to bovine viral diarrhea virus.”, Ring SC, Graham DA, Kelleher MM, Doherty ML, Berry DP
  10. “Carcass characteristics of cattle differing in Jersey proportion.”, Berry DP, Judge MJ, Evans RD, Buckley F, Cromie AR
  11. “Identification of possible cow grazing behaviour indicators for restricted grass availability in a pasture-based spring calving dairy system”, lJ.Werner, C.Umstatter, E.Kennedy, J.Grant, L.Leso, A.Geoghegan, L.Shalloo, M.Schick, B.O’Brien